RNA package

Module contents

A library for the prediction and comparison of RNA secondary structures.

Amongst other things, our implementations allow you to:

• predict minimum free energy secondary structures

• calculate the partition function for the ensemble of structures

• compute various equilibrium probabilities

• calculate suboptimal structures in a given energy range

• compute local structures in long sequences

• predict consensus secondary structures from a multiple sequence alignment

• predict melting curves

• search for sequences folding into a given structure

• compare two secondary structures

• predict interactions between multiple RNA molecules